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Special Report on Infectious Disease: The fungus within us

Is our arsenal evolving quickly enough to match its protean foe?
Written byRandall C Willis
| 18 min read

Special Report: Infectious Disease

The fungus within us

Is our arsenal evolving quickly enough to match its protean foe?

By Randall C Willis

Taking a semester off from college to help his father get a small business off the ground, Rolando was like many other young adults living in Southern California—a second-generation American of divorced parents. Most of his weekends were spent balancing study and hanging out with friends, but this autumn was about work.

Typically quite healthy, he initially ignored his cough, but after seven days, a slight fever set in. His doctor prescribed an antibiotic.

Three days later, the cough deepened, causing discomfort in his chest, and Rolando was sore all over. He was weak and couldn’t eat.

Admission to a nearby emergency department led to a diagnosis of Valley fever, also known as coccidioidomycosis, and six months of antimicrobial treatment.

Why didn’t the antibiotic work? Because, like thousands of others in the American Southwest that year, Rolando’s life was toppled by a fungus.

Less respect, more risk?

Every week, newspapers across the country describe large and small outbreaks of viral and bacterial diseases. Likewise, the pages of the CDC’s Morbidity & Mortality Weekly Report recount pockets of Salmonella-tainted food or norovirus. And very recently, reports surfaced of cases of the bubonic plague in the United States.

What is less present are mentions of debilitating and life-threatening fungal infections. If fungi are discussed, it is typically in ads decrying jock itch.

“A lot of people, when they think about fungal infections, think about relatively mild infections—say, toenail infection, athlete’s foot, vulvovaginal candidiasis (VVC), thrush,” suggests Marco Taglietti, president and CEO of Scynexis.

And even in cases of life-threatening infections, he continues, the infection often occurs within the context of another condition such as cancer or bone marrow transplant, where the patient is immunocompromised.

Thus, he says, “when someone dies from a fungal infection under one of these conditions, people say they died of complications of cancer.”

However, Oren Cohen, chief medical officer for Viamet Pharmaceuticals, is quick to caution against considering the non-life-threatening infections as little more than aesthetic problems.

“Recurrent VVC carries very significant morbidity for people who suffer with it, which is a very substantial number of women in their reproductive years especially,” he explains, citing tremendous issues in lost productivity, personal relationships and morbidity.

As well, he highlights the challenges of Valley fever, a respiratory illness highly endemic to the southwestern United States as well as parts of Central and South America.

Taglietti adds that even though fungal infections are less common than their bacterial and viral counterparts, the outcomes can be significantly worse.

Aspergillus has a mortality of 40 to 50 percent,” he says. “Candida has a mortality of 20 to 40 percent; some rare molds, mortality can be as high as 80 to 90 percent.”

And according to recent European studies, the incidence of invasive fungal infection (IFI) is on the rise.

Examining hospital records across France, Françoise Dromer and colleagues noted that over a 10-year period from 2001 to 2010, almost 36,000 cases of IFI were recorded, with the incidence increasing 1.5 percent annually. Of these cases, more than a quarter resulted in death, increasing 2.9 percent annually.

The authors were quick to caution, however, the limitations of their population-based study.

“The increase in IFIs observed parallels a better awareness of clinicians and microbiologists of the threat of IFIs in at-risk populations, improving the sensitivity of the hospital-based dataset,” they wrote. As well, “the advent of new diagnostic tools for the detection of many invasive mycoses may have affected our ability to diagnose these diseases over the study period, which may have had a substantial impact on the temporal trends observed.”

Perversely, suggests Jeff Stein, president and CEO of Cidara Therapeutics, the rise in fungal infections may be partly due to success in other therapeutic areas such as immunotherapy.

Echoing Taglietti, Stein says, “Unlike in bacterial and viral infections, most fungal infections occur in patients who are already hospitalized for something else.”

“These are patients whose immune systems may be intentionally dialed down through the use of immunotherapies, and when their immune system is attenuated, they become at-risk for fungal infections,” he concludes. “That’s where the vast majority of invasive fungal infections are contracted—in the hospital.”

And these complications are not helped by the limited armamentarium of antifungals to date (see table below).

Limited weapons, greater resistance

“To find antifungals is much more difficult than to find antibacterials because the biological machinery of the fungi is more similar to the biological machinery of the human cells,” offers Taglietti. In short, fungi are eukaryotes, just like humans.

“You can find a lot of targets in bacteria that don’t have a counterpart in human cells,” he continues. “For fungi, it is a much more difficult challenge to find good targets.”

“This explains why for bacteria, you have probably a dozen different classes and hundreds of antibacterials, whereas for serious fungal infections, you have only three classes—polyenes, azoles and echinocandins—and basically seven or eight products.”

With so many potential fungal targets having human homologs, the risk for unintended effects increases.

“The biggest class of drugs, the azoles, target fungal cytochrome P450s, which is why there are a lot of drug-drug interactions,” offers Stein. “And that’s a major issue with that class of drugs because these are complicated patients on many different drugs.”

“The biological difference doesn’t entirely explain the phenomenon you observe,” cautions Cohen. “Part of it has to do with the way drugs are developed.

“Frankly, it’s a lot easier to put your finger on a bunch of cases of community-acquired pneumonia to do a clinical trial than it is to do invasive fungi, so part of it is a feasibility issue.”

Unfortunately, one way in which fungi are more microbial than human is in their ability to rapidly respond to environmental stresses, and this includes pharmaceutical assault. Just as with the advent of superbugs expressing multidrug resistance (MDR), superfungi are becoming increasingly prevalent.

Cohen highlights their molecular versatility.

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Published In

Volume 13 - Issue 9 | September 2017

September 2017

September 2017 Issue

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