Each year, samples from individuals infected with influenzaare collected and shared in order to increase knowledge about the flu subtypesprevalent in different regions. The
World Health Organization (WHO) then usesthe collected data to determine which strains should be used in designing avaccine for that year's epidemic. In the past, however, the cost of sequencinghas meant that only about 20 percent of the patient samples collected are used.
"Using next generation sequencing technology makeswhole influenza genome sequencing much easier, and much less expensive thanolder sequencing techniques, when used appropriately," said Steve Glavas,head of the NGS Platform at the Swedish Institute for Communicable DiseaseControl, in a statement.
This collaboration will serve as a pilot program todetermine the efficacy of influenza virus typing via semiconductor sequencingon Life Technologies' Ion PGM sequencer, which was chosen for its accuracy,sensitivity and economical benefits, as it costs less than $100 per isolate andenables scientists to multiplex at least 10 samples in one run. The networkpartners have agreed to share data and experiences, and the results of thestudy will be submitted to a peer-reviewed research journal.
Each year, flu epidemics lead to roughly 3 million to 5million cases of serious illness and anywhere from 250,000 to 500,000 deaths,according to WHO.
SOURCE: Life Technologies press release